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lcl3 mitochondrial nuclease Lcl3, implicated in DNA repair [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540556, updated on 18-Sep-2024

Summary

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Official Symbol
lcl3
Official Full Name
mitochondrial nuclease Lcl3, implicated in DNA repair
Primary source
PomBase:SPBC19F8.04c
Locus tag
SPOM_SPBC19F8.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See lcl3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3234645..3235753, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene nuclear movement protein nudc Neighboring gene ENTH/VHS domain protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables nuclease activity ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
mitochondrial nuclease Lcl3, implicated in DNA repair

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3234645..3235753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022266.3 → NP_596346.1  mitochondrial nuclease Lcl3, implicated in DNA repair [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596346.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60168
    Conserved Domains (2) summary
    smart00318
    Location:55 → 216
    SNc; Staphylococcal nuclease homologues
    pfam00565
    Location:102 → 216
    SNase; Staphylococcal nuclease homologue
Nucleotide Protein
Heading Accession and Version

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