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hrd3 HRD ubiquitin ligase complex subunit [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540568, updated on 18-Sep-2024

Summary

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Official Symbol
hrd3
Official Full Name
HRD ubiquitin ligase complex subunit
Primary source
PomBase:SPBC28F2.08c
Locus tag
SPOM_SPBC28F2.08C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See hrd3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (1581815..1584288, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene xylose and arabinose reductase Neighboring gene ncRNA Neighboring gene Prp19 complex subunit Cwf7 Neighboring gene ERMES complex subunit, membrane tether and lipid transfer protein Mdm12 Neighboring gene DNA recombination mediator Sfr1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene transcription factor TFIIA complex large subunit Toa1 Neighboring gene SAGA complex subunit Ngg1/Ada3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  2. High-Throughput Identification of Nuclear Envelope Protein Interactions in Schizosaccharomyces pombe Using an Arrayed Membrane Yeast-Two Hybrid Library. Varberg JM, et al. G3 (Bethesda), 2020 Dec 3. PMID 33109728, Free PMC Article
  3. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article
  4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in ERAD pathway ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of Hrd1p ubiquitin ligase complex ISO
Inferred from Sequence Orthology
more info
  
is_active_in endoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
HRD ubiquitin ligase complex subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1581815..1584288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021564.3 → NP_595669.1  HRD ubiquitin ligase complex subunit [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595669.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P78930, P78931, Q9USV0
    Conserved Domains (4) summary
    smart00671
    Location:527 → 557
    SEL1; Sel1-like repeats
    COG0790
    Location:472 → 561
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:473 → 502
    SLR; SLR repeat [structural motif]
    pfam08238
    Location:280 → 315
    Sel1; Sel1 repeat
Nucleotide Protein
Heading Accession and Version

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