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pat1 serine/threonine protein kinase Ran1/Pat1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540580, updated on 18-Sep-2024

Summary

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Official Symbol
pat1
Official Full Name
serine/threonine protein kinase Ran1/Pat1
Primary source
PomBase:SPBC19C2.05
Locus tag
SPOM_SPBC19C2.05
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
ran1
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Genomic context

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See pat1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (1682861..1684555)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein mug124

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pat1 activates late steps in mRNA decay by multiple mechanisms. Lobel JH, et al. Proc Natl Acad Sci U S A, 2019 Nov 19. PMID 31690658, Free PMC Article
  2. Mutants of Schizosaccharomyces pombe which sporulate in the haploid state. Lino Y, et al. Mol Gen Genet, 1985. PMID 25864229
  3. Members of the Arabidopsis 14-3-3 gene family trans-complement two types of defects in fission yeast. Kuromori T, et al. Plant Sci, 2000 Sep 8. PMID 10996255
  4. Cpc2, a fission yeast homologue of mammalian RACK1 protein, interacts with Ran1 (Pat1) kinase To regulate cell cycle progression and meiotic development. McLeod M, et al. Mol Cell Biol, 2000 Jun. PMID 10805744, Free PMC Article
  5. Characterization of functional regions in the Schizosaccharomyces pombe mei3 developmental activator. Wang W, et al. Genetics, 1998 Nov. PMID 9799254, Free PMC Article

See all (54) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein serine/threonine kinase activity EXP
Inferred from Experiment
more info
 PubMed 
enables protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein serine/threonine kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell cycle G1/S phase transition IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of cell cycle switching, mitotic to meiotic cell cycle IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in negative regulation of induction of conjugation with cellular fusion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of protein import into nucleus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of G1/S transition of mitotic cell cycle EXP
Inferred from Experiment
more info
 PubMed 
involved_in signal transduction NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm HDA PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine protein kinase Ran1/Pat1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1682861..1684555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021587.3 → NP_595690.1  serine/threonine protein kinase Ran1/Pat1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595690.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P08092, Q9UUD5
    Conserved Domains (2) summary
    smart00220
    Location:19 → 291
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd13993
    Location:17 → 295
    STKc_Pat1_like; Catalytic domain of Fungal Pat1-like Serine/Threonine kinases
Nucleotide Protein
Heading Accession and Version

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