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sen34 tRNA-splicing endonuclease catalytic subunit Sen34 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540591, updated on 18-Sep-2024

Summary

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Official Symbol
sen34
Official Full Name
tRNA-splicing endonuclease catalytic subunit Sen34
Primary source
PomBase:SPBC19C7.07c
Locus tag
SPOM_SPBC19C7.07C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See sen34 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (2833988..2835032, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene proline--tRNA (Pro) ligase Prs1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA methyltransferase Ppm2 Neighboring gene ncRNA Neighboring gene endonuclease Uve1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  2. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene. Lang BF, et al. J Mol Biol, 1985 Aug 5. PMID 4046021

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables tRNA-intron endonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in tRNA-type intron splice site recognition and cleavage IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of tRNA-intron endonuclease complex ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
tRNA-splicing endonuclease catalytic subunit Sen34

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2833988..2835032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022083.3 → NP_596163.1  tRNA-splicing endonuclease catalytic subunit Sen34 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596163.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60156
    Conserved Domains (2) summary
    COG1676
    Location:89 → 283
    SEN2; tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
    pfam01974
    Location:179 → 249
    tRNA_int_endo; tRNA intron endonuclease, catalytic C-terminal domain
Nucleotide Protein
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