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pus7 pseudouridine synthase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540668, updated on 18-Sep-2024

Summary

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Official Symbol
pus7
Official Full Name
pseudouridine synthase
Primary source
PomBase:SPBC1A4.09
Locus tag
SPOM_SPBC1A4.09
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See pus7 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (1993923..1998937)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene chaperonin-containing T-complex gamma subunit Cct3 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene mediator complex subunit Med14 Neighboring gene ncRNA Neighboring gene ACN9 family protein Neighboring gene V-ATPase assembly factor Pkr1 Neighboring gene anaphase-promoting complex cullin family subunit Apc2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables pseudouridine synthase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables snRNA pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA pseudouridine(13) synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in enzyme-directed rRNA pseudouridine synthesis ISO
Inferred from Sequence Orthology
more info
  
involved_in pseudouridine synthesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in snRNA pseudouridine synthesis ISO
Inferred from Sequence Orthology
more info
  
involved_in tRNA pseudouridine synthesis ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
pseudouridine synthase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1993923..1998937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021715.3 → NP_595812.1  pseudouridine synthase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595812.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74343
    Conserved Domains (1) summary
    cd02576
    Location:239 → 659
    PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family
Nucleotide Protein
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Gene LinkOut

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