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spt4 DSIF transcription elongation factor complex subunit Spt4 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540700, updated on 18-Sep-2024

Summary

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Official Symbol
spt4
Official Full Name
DSIF transcription elongation factor complex subunit Spt4
Primary source
PomBase:SPBC21C3.16c
Locus tag
SPOM_SPBC21C3.16C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See spt4 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3824636..3824994, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene aldehyde dehydrogenase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein psg1 Neighboring gene ncRNA Neighboring gene serine/threonine protein kinase (DDK family) Spo4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the Schizosaccharomyces pombe Spt5-Spt4 complex. Schwer B, et al. RNA, 2009 Jul. PMID 19460865, Free PMC Article
  2. Interactions between fission yeast mRNA capping enzymes and elongation factor Spt5. Pei Y, et al. J Biol Chem, 2002 May 31. PMID 11893740
  3. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
  4. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA polymerase II complex binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription elongation factor activity EXP
Inferred from Experiment
more info
 PubMed 
enables zinc ion binding ISO
Inferred from Sequence Orthology
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription elongation by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription elongation by RNA polymerase II IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of DSIF complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of DSIF complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in chromatin IC
Inferred by Curator
more info
 PubMed 
is_active_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
DSIF transcription elongation factor complex subunit Spt4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3824636..3824994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022516.3 → NP_596596.1  DSIF transcription elongation factor complex subunit Spt4 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596596.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9P7K8
    Conserved Domains (1) summary
    COG5204
    Location:1 → 105
    SPT4; Transcription elongation factor SPT4 [Transcription]
Nucleotide Protein
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