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gar1 H/ACA snoRNP pseudouridylase subunit Gar1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540705, updated on 18-Sep-2024

Summary

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Official Symbol
gar1
Official Full Name
H/ACA snoRNP pseudouridylase subunit Gar1
Primary source
PomBase:SPBC20F10.01
Locus tag
SPOM_SPBC20F10.01
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPBC25H2.01c
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Genomic context

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See gar1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003423.3 (3283337..3284486)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol synthesis protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene threonine--tRNA (Thr) ligase Trs1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The SpGAR1 gene of Schizosaccharomyces pombe encodes the functional homologue of the snoRNP protein GAR1 of Saccharomyces cerevisiae. Girard JP, et al. Nucleic Acids Res, 1993 May 11. PMID 8502556, Free PMC Article
  2. Mitosis-specific phosphorylation of gar2, a fission yeast nucleolar protein structurally related to nucleolin. Gulli MP, et al. Chromosoma, 1997 Jun. PMID 9211981
  3. gar2 is a nucleolar protein from Schizosaccharomyces pombe required for 18S rRNA and 40S ribosomal subunit accumulation. Gulli MP, et al. Nucleic Acids Res, 1995 Jun 11. PMID 7596817, Free PMC Article
  4. Regulation of the nuclear poly(A)-binding protein by arginine methylation in fission yeast. Perreault A, et al. J Biol Chem, 2007 Mar 9. PMID 17213188
  5. Poly(A) tail-mediated gene regulation by opposing roles of Nab2 and Pab2 nuclear poly(A)-binding proteins in pre-mRNA decay. Grenier St-Sauveur V, et al. Mol Cell Biol, 2013 Dec. PMID 24081329, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables box H/ACA snoRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in snRNA pseudouridine synthesis ISO
Inferred from Sequence Orthology
more info
  
involved_in snoRNA guided rRNA pseudouridine synthesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
H/ACA snoRNP pseudouridylase subunit Gar1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3283337..3284486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022286.3 → NP_596365.1  H/ACA snoRNP pseudouridylase subunit Gar1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596365.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q06975
    Conserved Domains (1) summary
    pfam04410
    Location:20 → 128
    Gar1; Gar1/Naf1 RNA binding region
Nucleotide Protein
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