U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ppr3 PPR repeat-containing protein Ppr3 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540724, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ppr3
Official Full Name
PPR repeat-containing protein Ppr3
Primary source
PomBase:SPBC19G7.07c
Locus tag
SPOM_SPBC19G7.07C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
dmr1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ppr3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (2359374..2363597, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA-binding transcription factor, MADS-box Mbx1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene arrestin-related substrate adaptor for RhoGEF, Art1 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Disruption of ppr3, ppr4, ppr6 or ppr10 induces flocculation and filamentous growth in Schizosaccharomyces pombe. Su Y, et al. FEMS Microbiol Lett, 2018 Aug 1. PMID 29878109
  2. Loss of ppr3, ppr4, ppr6, or ppr10 perturbs iron homeostasis and leads to apoptotic cell death in Schizosaccharomyces pombe. Su Y, et al. FEBS J, 2017 Jan. PMID 27886462
  3. A genome wide study in fission yeast reveals nine PPR proteins that regulate mitochondrial gene expression. Kühl I, et al. Nucleic Acids Res, 2011 Oct. PMID 21727087, Free PMC Article
  4. Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Rallis C, et al. Sci Rep, 2017 Mar 10. PMID 28281664, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Absence of ppr3, ppr4, ppr6 or ppr10 can result in nonsexual flocculation and filamentous growth of cells.
    Title: Disruption of ppr3, ppr4, ppr6 or ppr10 induces flocculation and filamentous growth in Schizosaccharomyces pombe.
  2. The results suggest that disrupted iron homeostasis in Deltappr3, Deltappr4, Deltappr6, and Deltappr10 mutants may lead to an increase in the level of ROS and induction of apoptotic cell death in S. pombe.
    Title: Loss of ppr3, ppr4, ppr6, or ppr10 perturbs iron homeostasis and leads to apoptotic cell death in Schizosaccharomyces pombe.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in mitochondrial gene expression IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mitochondrial gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in mitochondrial matrix IC
Inferred by Curator
more info
  
is_active_in mitochondrion HDA PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
PPR repeat-containing protein Ppr3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2359374..2363597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021881.3 → NP_595973.1  PPR repeat-containing protein Ppr3 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595973.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O42955
    Conserved Domains (2) summary
    sd00004
    Location:302 → 329
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:333 → 384
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials