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jmj3 Lid2 complex histone demethylase H3-K36 subunit Jmj3 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540780, updated on 18-Sep-2024

Summary

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Official Symbol
jmj3
Official Full Name
Lid2 complex histone demethylase H3-K36 subunit Jmj3
Primary source
PomBase:SPBC83.07
Locus tag
SPOM_SPBC83.07
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
kdm4
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Genomic context

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See jmj3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (1521197..1523695)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene anaphase-promoting complex platform subcomplex scaffold subunit Apc15 Neighboring gene RNA-binding protein Yme2 Neighboring gene ncRNA Neighboring gene mitochondrial 54S ribosomal protein bL36m Neighboring gene ncRNA Neighboring gene chaperone, AAA family ATPase Rvb2 Neighboring gene ncRNA Neighboring gene U5 snRNP complex subunit LIN1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Lid2 is required for coordinating H3K4 and H3K9 methylation of heterochromatin and euchromatin. Li F, et al. Cell, 2008 Oct 17. PMID 18957202, Free PMC Article
  2. High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts. Roguev A, et al. J Biol Chem, 2003 Mar 7. PMID 12488447
  3. A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Roguev A, et al. Mol Cell Proteomics, 2004 Feb. PMID 14617822
  4. Systematic analysis reveals the prevalence and principles of bypassable gene essentiality. Li J, et al. Nat Commun, 2019 Mar 1. PMID 30824696, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables histone H3K36 demethylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables histone H3K9 demethylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in chromatin remodeling IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of Lid2 complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chromatin IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Lid2 complex histone demethylase H3-K36 subunit Jmj3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1521197..1523695
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021533.3 → NP_595639.1  Lid2 complex histone demethylase H3-K36 subunit Jmj3 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595639.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94691
    Conserved Domains (2) summary
    smart00545
    Location:33 → 74
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:200 → 316
    JmjC; JmjC domain, hydroxylase
Nucleotide Protein
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