U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ppr2 PPR repeat-containing protein Ppr2 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540797, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ppr2
Official Full Name
PPR repeat-containing protein Ppr2
Primary source
PomBase:SPBC18H10.11c
Locus tag
SPOM_SPBC18H10.11C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ppr2 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (1789291..1790682, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene WW domain-binding protein 4 Neighboring gene ubiquitin hydrolase Ubp4 Neighboring gene zf-CHY type zinc finger protein Neighboring gene splicing-associated factor Saf4 Neighboring gene ncRNA Neighboring gene RNase MRP subunit, ribosomal protein L7-like Rpl701 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 40S ribosomal protein uS11

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The deletion of ppr2 interferes iron sensing and leads to oxidative stress response in Schizosaccharomyces pombe. Liu Z, et al. Mitochondrion, 2024 May. PMID 38499131
  2. A genome wide study in fission yeast reveals nine PPR proteins that regulate mitochondrial gene expression. Kühl I, et al. Nucleic Acids Res, 2011 Oct. PMID 21727087, Free PMC Article
  3. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article
  4. Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Rallis C, et al. Sci Rep, 2017 Mar 10. PMID 28281664, Free PMC Article
  5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The deletion of ppr2 interferes iron sensing and leads to oxidative stress response in Schizosaccharomyces pombe.
    Title: The deletion of ppr2 interferes iron sensing and leads to oxidative stress response in Schizosaccharomyces pombe.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in mitochondrial gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in mitochondrial matrix IC
Inferred by Curator
more info
  
is_active_in mitochondrion HDA PubMed 
is_active_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
PPR repeat-containing protein Ppr2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1789291..1790682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021633.3 → NP_595735.1  PPR repeat-containing protein Ppr2 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595735.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60142
    Conserved Domains (2) summary
    sd00004
    Location:84 → 106
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:109 → 156
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials