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puf1 RNA-binding protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540913, updated on 18-Sep-2024

Summary

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Official Symbol
puf1
Official Full Name
RNA-binding protein
Primary source
PomBase:SPBC56F2.08c
Locus tag
SPOM_SPBC56F2.08C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See puf1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (4096930..4100074)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene arginine specific carbamoyl-phosphate synthase subunit Arg5 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosome biogenesis factor recycling AAA family ATPase Neighboring gene ncRNA Neighboring gene protein tam13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity. Qiu C, et al. Nucleic Acids Res, 2019 Sep 19. PMID 31294800, Free PMC Article
  2. Fission Yeast Puf2, a Pumilio and FBF Family RNA-Binding Protein, Links Stress Granules to Processing Bodies. Hsiao WY, et al. Mol Cell Biol, 2020 Apr 13. PMID 32071154, Free PMC Article
  3. Posttranslational Arginylation Enzyme Arginyltransferase1 Shows Genetic Interactions With Specific Cellular Pathways in vivo. Wiley DJ, et al. Front Physiol, 2020. PMID 32435206, Free PMC Article
  4. SIN-inhibitory phosphatase complex promotes Cdc11p dephosphorylation and propagates SIN asymmetry in fission yeast. Singh NS, et al. Curr Biol, 2011 Dec 6. PMID 22119525, Free PMC Article
  5. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Distinct RNA-binding modules in a single PUF1 protein cooperate to determine RNA specificity in Schizosaccharomyces pombe.
    Title: Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables mRNA 3'-UTR AU-rich region binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA 3'-UTR AU-rich region binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in P-body EXP
Inferred from Experiment
more info
 PubMed 
is_active_in P-body IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm HDA PubMed 
is_active_in cytoplasmic stress granule EXP
Inferred from Experiment
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    4096930..4100074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022634.3 → NP_596709.1  RNA-binding protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596709.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60059
    Conserved Domains (2) summary
    cd12340
    Location:1 → 71
    RBD_RRM1_NPL3; RNA recognition motif 1 in yeast nucleolar protein 3 (Npl3p) and similar proteins
    cl21719
    Location:169 → 428
    Pumilio; Pumilio-family RNA binding domain
Nucleotide Protein
Heading Accession and Version

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