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SPBC3D6.12 putative U3 snoRNA associated protein Dip2 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540971, updated on 17-May-2024

Summary

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Gene symbol
SPBC3D6.12
Gene description
putative U3 snoRNA associated protein Dip2
Primary source
PomBase:SPBC3D6.12
Locus tag
SPBC3D6.12
See related
FungiDB:SPBC3D6.12; VEuPathDB:SPBC3D6.12
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See SPBC3D6.12 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (1290498..1293435)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene DNA polymerase epsilon subunit Dpb4 Neighboring gene AP-endonuclease Apn2 Neighboring gene putative SUMO-targeted ubiquitin-protein ligase E3 Slx8 Neighboring gene putative disulfide isomerase Pdi2 Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene putative transmembrane receptor Wsc1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article
  2. A non-transcriptional role for the glucocorticoid receptor in mediating the cell stress response. Ptushkina M, et al. Sci Rep, 2017 Sep 21. PMID 28935859, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables snoRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small-subunit processome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
putative U3 snoRNA associated protein Dip2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1290498..1293435
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021433.2 → NP_595524.1  putative U3 snoRNA associated protein Dip2 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595524.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P87177
    Conserved Domains (4) summary
    COG2319
    Location:152 → 656
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:391 → 686
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04003
    Location:789 → 889
    Utp12; Dip2/Utp12 Family
    sd00039
    Location:342 → 394
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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