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iqw1 WD repeat-containing protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541121, updated on 18-Sep-2024

Summary

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Official Symbol
iqw1
Official Full Name
WD repeat-containing protein
Primary source
PomBase:SPBC609.03
Locus tag
SPOM_SPBC609.03
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
iqwd1
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Genomic context

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See iqw1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_003423.3 (3163140..3165902)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene Dis3-like exonuclease family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene phosphatidylinositol-3,4,5-trisphosphate3-phosphatase Ptn1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene plasma membrane spermine family transmembrane transporter Caf5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Schizosaccharomyces pombe Ddb1 recruits substrate-specific adaptor proteins through a novel protein motif, the DDB-box. Fukumoto Y, et al. Mol Cell Biol, 2008 Nov. PMID 18794354, Free PMC Article
  2. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article
  3. Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex. Stewart EV, et al. Mol Cell, 2011 Apr 22. PMID 21504829, Free PMC Article
  4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in negative regulation of fatty acid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
WD repeat-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3163140..3165902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022235.3 → NP_596313.1  WD repeat-containing protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596313.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94527
    Conserved Domains (3) summary
    COG2319
    Location:39 → 226
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:49 → 87
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:32 → 173
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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