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knk1 AAA family ATPase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541249, updated on 18-Sep-2024

Summary

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Official Symbol
knk1
Official Full Name
AAA family ATPase
Primary source
PomBase:SPBC947.01
Locus tag
SPOM_SPBC947.01
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
alf1
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Genomic context

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See knk1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003423.3 (679903..682666, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene putative NatC N-acetyltransferase non-catalytic subunit Naa38 Neighboring gene AP-1 adaptor complex beta subunit Apl2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene decaprenyl diphosphate synthase subunit Dps1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Oscillatory AAA+ ATPase Knk1 constitutes a novel morphogenetic pathway in fission yeast. Scheffler K, et al. Proc Natl Acad Sci U S A, 2014 Dec 16. PMID 25422470, Free PMC Article
  2. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
  3. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding ISM
Inferred from Sequence Model
more info
  
enables ATP hydrolysis activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables microtubule severing ATPase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in microtubule bundle formation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in microtubule severing ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in cell division site HDA PubMed 
is_active_in cell tip HDA PubMed 
is_active_in medial cortex septin ring IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in new growing cell tip IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in old growing cell tip IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
AAA family ATPase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    679903..682666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021182.3 → NP_595275.1  AAA family ATPase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595275.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O43078
    Conserved Domains (4) summary
    smart00382
    Location:413 → 556
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:415 → 554
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:623 → 657
    Vps4_C; Vps4 C terminal oligomerization domain
    cl21455
    Location:382 → 432
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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