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glycoprotein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541363, updated on 18-Sep-2024

Summary

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Official Full Name
glycoprotein
Primary source
PomBase:SPBPJ4664.02
Locus tag
SPOM_SPBPJ4664.02
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (687716..699886)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene decaprenyl diphosphate synthase subunit Dps1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene M-factor precursor Mfm3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in flocculation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in external side of cell wall NAS
Non-traceable Author Statement
more info
  
is_active_in external side of plasma membrane NAS
Non-traceable Author Statement
more info
  
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
glycoprotein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    687716..699886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021184.3 → NP_595277.1  glycoprotein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595277.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q96WV6
    Conserved Domains (1) summary
    pfam06131
    Location:1716 → 1751
    DUF963; Schizosaccharomyces pombe repeat of unknown function (DUF963)
Nucleotide Protein
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