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rna4 Prp4 family U4/U5/U6 small nuclear ribonucleoprotein complex subunit [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541477, updated on 18-Sep-2024

Summary

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Official Symbol
rna4
Official Full Name
Prp4 family U4/U5/U6 small nuclear ribonucleoprotein complex subunit
Primary source
PomBase:SPAC227.12
Locus tag
SPOM_SPAC227.12
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
prp4
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Genomic context

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See rna4 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (515794..517504)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene folylpolyglutamate synthase Neighboring gene prefoldin subunit 2 Neighboring gene putative misfolded glycoprotein sensor Yos9 Neighboring gene ncRNA Neighboring gene Fe-sulfur cluster assembly protein Isu1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uridine kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dim1p is required for efficient splicing and export of mRNA encoding lid1p, a component of the fission yeast anaphase-promoting complex. Carnahan RH, et al. Eukaryot Cell, 2005 Mar. PMID 15755920, Free PMC Article
  2. The histone variant H2A.Z promotes splicing of weak introns. Nissen KE, et al. Genes Dev, 2017 Apr 1. PMID 28446597, Free PMC Article
  3. Systematic two-hybrid and comparative proteomic analyses reveal novel yeast pre-mRNA splicing factors connected to Prp19. Ren L, et al. PLoS One, 2011 Feb 28. PMID 21386897, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables U4 snRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables U6 snRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome EXP
Inferred from Experiment
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U4/U6 x U5 tri-snRNP complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol HDA PubMed 

General protein information

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Preferred Names
Prp4 family U4/U5/U6 small nuclear ribonucleoprotein complex subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    515794..517504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018366.3 → NP_592966.1  Prp4 family U4/U5/U6 small nuclear ribonucleoprotein complex subunit [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_592966.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9UTC7
    Conserved Domains (4) summary
    smart00500
    Location:48 → 92
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    COG2319
    Location:178 → 460
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:174 → 460
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:178 → 212
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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