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aah2 alpha-amylase 2 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541501, updated on 22-Jun-2024

Summary

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Gene symbol
aah2
Gene description
alpha-amylase 2
Locus tag
SPOM_SPAC23D3.14C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Old locus tag
SPAC23D3.14c
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Genomic context

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See aah2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003424.3 (4373039..4374987, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene guanyl-nucleotide exchange factor Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cell wall alpha-1,3-glucan synthase Mok11 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of fungal GPI proteins. De Groot PW, et al. Yeast, 2003 Jul 15. PMID 12845604
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables alpha-amylase activity ISM
Inferred from Sequence Model
more info
  
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in fungal-type cell wall biogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in external side of plasma membrane TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
alpha-amylase 2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4373039..4374987 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019980.1 → NP_594551.1  alpha-amylase 2 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594551.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09840
    Conserved Domains (3) summary
    cd11319
    Location:26 → 403
    AmyAc_euk_AmyA; Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    pfam00128
    Location:66 → 369
    Alpha-amylase; Alpha amylase, catalytic domain
    pfam09260
    Location:420 → 497
    DUF1966; Domain of unknown function (DUF1966)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials