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sec24 coincidence detector Sec24/Sfb2 subunit [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541601, updated on 18-Sep-2024

Summary

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Official Symbol
sec24
Official Full Name
coincidence detector Sec24/Sfb2 subunit
Primary source
PomBase:SPAC22F8.08
Locus tag
SPOM_SPAC22F8.08
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
sfb2
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Genomic context

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See sec24 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (4799595..4802652)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RNA polymerase I termination factor Rtf1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene rRNA processing protein Rrp16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The actomyosin ring recruits early secretory compartments to the division site in fission yeast. Vjestica A, et al. Mol Biol Cell, 2008 Mar. PMID 18184749, Free PMC Article
  2. Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways. Das J, et al. Sci Signal, 2013 May 21. PMID 23695164, Free PMC Article
  3. Systematic analysis reveals the prevalence and principles of bypassable gene essentiality. Li J, et al. Nat Commun, 2019 Mar 1. PMID 30824696, Free PMC Article
  4. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables SNARE binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular protein transport IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
part_of COPII vesicle coat IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cis-Golgi network IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in endoplasmic reticulum exit site IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum exit site IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in equatorial cell cortex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
coincidence detector Sec24/Sfb2 subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4799595..4802652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020159.3 → NP_594731.1  coincidence detector Sec24/Sfb2 subunit [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594731.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P78800, Q9UUI5
    Conserved Domains (6) summary
    COG5028
    Location:1 → 926
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:327 → 570
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:792 → 867
    Gelsolin; Gelsolin repeat
    pfam04810
    Location:253 → 290
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:669 → 767
    Sec23_helical; Sec23/Sec24 helical domain
    pfam08033
    Location:572 → 654
    Sec23_BS; Sec23/Sec24 beta-sandwich domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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