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ubi1 ubiquitin-60S ribosomal protein L40 fusion protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541768, updated on 18-Sep-2024

Summary

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Official Symbol
ubi1
Official Full Name
ubiquitin-60S ribosomal protein L40 fusion protein
Primary source
PomBase:SPAC11G7.04
Locus tag
SPOM_SPAC11G7.04
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See ubi1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (3968996..3969558)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene HECT-type ubiquitin-protein ligase E3 Pub1 Neighboring gene isocitrate dehydrogenase (NAD+) subunit 1 Idh1 Neighboring gene ncRNA Neighboring gene S-malonyltransferase Mct1 Neighboring gene protein Mug132 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Involvement of rhp23, a Schizosaccharomyces pombe homolog of the human HHR23A and Saccharomyces cerevisiae RAD23 nucleotide excision repair genes, in cell cycle control and protein ubiquitination. Elder RT, et al. Nucleic Acids Res, 2002 Jan 15. PMID 11788722, Free PMC Article
  2. E3 ubiquitin ligase Pub1 is implicated in endocytosis of a GPI-anchored protein Ecm33 in fission yeast. Fang Y, et al. PLoS One, 2014. PMID 24454826, Free PMC Article
  3. The exocyst subunit Sec3 is regulated by a protein quality control pathway. Kampmeyer C, et al. J Biol Chem, 2017 Sep 15. PMID 28765280, Free PMC Article
  4. Promoter nucleosome dynamics regulated by signalling through the CTD code. Materne P, et al. Elife, 2015 Jun 22. PMID 26098123, Free PMC Article
  5. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables protein tag activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
  
enables ubiquitin protein ligase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
  
involved_in modification-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in ribosome biogenesis ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ubiquitin-60S ribosomal protein L40 fusion protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    3968996..3969558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019821.3 → NP_594398.1  ubiquitin-60S ribosomal protein L40 fusion protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594398.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13697, O14257, P0C014, P0C015, P0CH06, P0CH07, Q76PD0, Q9HDZ4
    Conserved Domains (3) summary
    cd01803
    Location:1 → 76
    Ubiquitin; Ubiquitin
    smart00213
    Location:1 → 72
    UBQ; Ubiquitin homologues
    pfam01020
    Location:78 → 126
    Ribosomal_L40e; Ribosomal L40e family
Nucleotide Protein
Heading Accession and Version

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