Format

Send to:

Choose Destination

rdh54 ATP-dependent DNA translocase Rdh54 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541798, updated on 22-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
rdh54
Gene description
ATP-dependent DNA translocase Rdh54
Locus tag
SPOM_SPAC22F3.03C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
mug34; tid1
Old locus tag
SPAC22F3.03c
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rdh54 in Genome Data Viewer
Location:
chromosome: I
Exon count:
15
Sequence:
Chromosome: I; NC_003424.3 (703693..707990)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene GTP-binding protein involved in beta-tubulin folding Alp41 Neighboring gene putative AMP binding enzyme Neighboring gene tRNA-Val Neighboring gene ncRNA Neighboring gene DNA-binding transcription factor Atf31 Neighboring gene phosphoacetylglucosamine mutase Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Functional interactions of meiotic recombination factors Rdh54 and Dmc1. Chi P, et al. DNA Repair (Amst), 2009 Feb 1. PMID 19028606, Free PMC Article
  2. The Mek1 phosphorylation cascade plays a role in meiotic recombination of Schizosaccharomyces pombe. Tougan T, et al. Cell Cycle, 2010 Dec 1. PMID 21084840, Free PMC Article
  3. Schizosaccharomyces pombe Rdh54 (TID1) acts with Rhp54 (RAD54) to repair meiotic double-strand breaks. Catlett MG, et al. Mol Biol Cell, 2003 Nov. PMID 14551247, Free PMC Article
  4. The telomere bouquet facilitates meiotic prophase progression and exit in fission yeast. Moiseeva V, et al. Cell Discov, 2017. PMID 29123917, Free PMC Article
  5. Increased meiotic crossovers and reduced genome stability in absence of Schizosaccharomyces pombe Rad16 (XPF). Mastro TL, et al. Genetics, 2014 Dec. PMID 25293972, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA binding IC
Inferred by Curator
more info
  
enables DNA translocase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in double-strand break repair via homologous recombination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in reciprocal meiotic recombination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in reciprocal meiotic recombination IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ATP-dependent DNA translocase Rdh54

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    703693..707990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018437.3 → NP_593038.2  ATP-dependent DNA translocase Rdh54 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593038.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09772, Q7ZA42
    Conserved Domains (3) summary
    cd00046
    Location:230 → 373
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:208 → 504
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:531 → 647
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials