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pub1 HECT-type ubiquitin-protein ligase E3 Pub1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541818, updated on 22-Jun-2024

Summary

Gene symbol
pub1
Gene description
HECT-type ubiquitin-protein ligase E3 Pub1
Locus tag
SPOM_SPAC11G7.02
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Old locus tag
SPAC11G7.02
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Genomic context

See pub1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003424.3 (3963066..3966172)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene protein Mtl2 Neighboring gene ncRNA Neighboring gene isocitrate dehydrogenase (NAD+) subunit 1 Idh1 Neighboring gene ubiquitin-60S ribosomal protein L40 fusion protein Neighboring gene S-malonyltransferase Mct1

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables phospholipid binding ISM
Inferred from Sequence Model
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables ubiquitin protein ligase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in Golgi apparatus HDA PubMed 
is_active_in cell periphery IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
HECT-type ubiquitin-protein ligase E3 Pub1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    3963066..3966172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019819.3NP_594396.1  HECT-type ubiquitin-protein ligase E3 Pub1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594396.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14454, Q92462
    Conserved Domains (5) summary
    cd08382
    Location:9131
    C2_Smurf-like; C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins
    smart00456
    Location:346378
    WW; Domain with 2 conserved Trp (W) residues
    COG5021
    Location:1767
    HUL4; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    cd00078
    Location:413765
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam00397
    Location:290319
    WW; WW domain