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rim1 single-strand DNA-binding protein Rim1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541933, updated on 18-Sep-2024

Summary

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Official Symbol
rim1
Official Full Name
single-strand DNA-binding protein Rim1
Primary source
PomBase:SPAC2F3.04c
Locus tag
SPOM_SPAC2F3.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See rim1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (3927451..3928377, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene translocation subcomplex subunit Sec72 Neighboring gene DNA-directed RNA polymerase I complex subunit Rpa49 Neighboring gene xylose and arabinose reductase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene karyopherin/importin beta family nuclear import signal receptor Kap104

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure and biochemical characterization of mitochondrial single-stranded DNA binding protein from Schizosaccharomyces pombe. Nishio M, et al. DNA Seq, 2006 Aug. PMID 17312948
  2. A stable tetramer is not the only oligomeric state that mitochondrial single-stranded DNA binding proteins can adopt. Singh SP, et al. J Biol Chem, 2019 Mar 15. PMID 30617184, Free PMC Article
  3. The proteasome factor Bag101 binds to Rad22 and suppresses homologous recombination. Saito Y, et al. Sci Rep, 2013. PMID 23779158, Free PMC Article
  4. Pfh1 Is an Accessory Replicative Helicase that Interacts with the Replisome to Facilitate Fork Progression and Preserve Genome Integrity. McDonald KR, et al. PLoS Genet, 2016 Sep. PMID 27611590, Free PMC Article
  5. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables single-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables single-stranded DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial DNA replication IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of helicase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in mitochondrial nucleoid IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
single-strand DNA-binding protein Rim1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    3927451..3928377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019804.3 → NP_594383.1  single-strand DNA-binding protein Rim1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594383.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14087
    Conserved Domains (2) summary
    COG0629
    Location:27 → 150
    Ssb; Single-stranded DNA-binding protein [Replication, recombination and repair]
    pfam00436
    Location:25 → 124
    SSB; Single-strand binding protein family
Nucleotide Protein
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Gene LinkOut

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