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rtr1 RNA polymerase II CTD phosphatase Rtr1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542005, updated on 18-Sep-2024

Summary

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Official Symbol
rtr1
Official Full Name
RNA polymerase II CTD phosphatase Rtr1
Primary source
PomBase:SPAC23A1.16c
Locus tag
SPOM_SPAC23A1.16C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See rtr1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (4104690..4105737, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cystathionine gamma-synthase-like protein Neighboring gene Schizosaccharomyces specific protein New11 Neighboring gene SNARE protein Sec20 Neighboring gene ncRNA Neighboring gene SH3 domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel method for purification of the endogenously expressed fission yeast Set2 complex. Suzuki S, et al. Protein Expr Purif, 2014 May. PMID 24583182
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity ISO
Inferred from Sequence Orthology
more info
  
enables RNA polymerase core enzyme binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
involved_in signaling NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA polymerase II CTD phosphatase Rtr1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4104690..4105737 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019874.3 → NP_594445.1  RNA polymerase II CTD phosphatase Rtr1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594445.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O42853
    Conserved Domains (2) summary
    pfam04181
    Location:63 → 131
    RPAP2_Rtr1; Rtr1/RPAP2 family
    cl09933
    Location:130 → 166
    ACAD; Acyl-CoA dehydrogenase
Nucleotide Protein
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