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vps41 HOPS complex subunit Vps41 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542058, updated on 18-Sep-2024

Summary

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Official Symbol
vps41
Official Full Name
HOPS complex subunit Vps41
Primary source
PomBase:SPAP27G11.05c
Locus tag
SPOM_SPAP27G11.05C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See vps41 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003424.3 (1615703..1618903, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene translation initiation factor eIF2 assembly protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-specific adenosine deaminase subunit Tad3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene AP-1 adaptor complex sigma subunit Aps1 Neighboring gene serine/threonine protein kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  2. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene. Lang BF, et al. J Mol Biol, 1985 Aug 5. PMID 4046021

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in Golgi to endosome transport ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in cellular response to starvation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in endosomal vesicle fusion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in late endosome to vacuole transport ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in macroautophagy IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein targeting to vacuole IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vacuole fusion, non-autophagic ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in vesicle docking ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of HOPS complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm HDA PubMed 
is_active_in late endosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
HOPS complex subunit Vps41

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1615703..1618903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018842.3 → NP_593409.2  HOPS complex subunit Vps41 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593409.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9P7N3
    Conserved Domains (5) summary
    smart00299
    Location:625 → 712
    CLH; Clathrin heavy chain repeat homology
    COG2319
    Location:29 → 254
    WD40; WD40 repeat [General function prediction only]
    pfam00637
    Location:628 → 714
    Clathrin; Region in Clathrin and VPS
    sd00039
    Location:44 → 78
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:44 → 204
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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