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jmj1 histone demethylase Jmj1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542086, updated on 18-Sep-2024

Summary

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Official Symbol
jmj1
Official Full Name
histone demethylase Jmj1
Primary source
PomBase:SPAC25H1.02
Locus tag
SPOM_SPAC25H1.02
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See jmj1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (2525804..2527510)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene LAlv9 family protein Neighboring gene ncRNA Neighboring gene protein Ddr48 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein Atg101 Neighboring gene ubiquitin-fold modifier-specific protease

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tfg3, a subunit of the general transcription factor TFIIF in Schizosaccharomyces pombe, functions under stress conditions. Kimura M, et al. Nucleic Acids Res, 2004. PMID 15616156, Free PMC Article
  2. Posttranslational Arginylation Enzyme Arginyltransferase1 Shows Genetic Interactions With Specific Cellular Pathways in vivo. Wiley DJ, et al. Front Physiol, 2020. PMID 32435206, Free PMC Article
  3. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  4. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article
  5. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables 2-oxoglutarate-dependent dioxygenase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables peptidyl-lysine 4-dioxygenase activity ISO
Inferred from Sequence Orthology
more info
  
enables sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translational termination ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of translational termination IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in chromatin ISM
Inferred from Sequence Model
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
histone demethylase Jmj1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2525804..2527510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019235.3 → NP_593806.1  histone demethylase Jmj1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593806.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13977
    Conserved Domains (1) summary
    pfam02373
    Location:225 → 332
    JmjC; JmjC domain, hydroxylase
Nucleotide Protein
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