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rps13 40S ribosomal protein uS15 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542108, updated on 18-Sep-2024

Summary

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Official Symbol
rps13
Official Full Name
40S ribosomal protein uS15
Primary source
PomBase:SPAC6F6.07c
Locus tag
SPOM_SPAC6F6.07C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See rps13 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003424.3 (2745872..2746692, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene cell polarity factor Rax2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene two-component GAP Cdc16 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation and characterization of Nrf1p, a novel negative regulator of the Cdc42p GTPase in Schizosaccharomyces pombe. Murray JM, et al. Genetics, 2000 Jan. PMID 10628977, Free PMC Article
  2. A large complex mediated by Moc1, Moc2 and Cpc2 regulates sexual differentiation in fission yeast. Paul SK, et al. FEBS J, 2009 Sep. PMID 19682301
  3. Cotranscriptional recruitment of the nuclear poly(A)-binding protein Pab2 to nascent transcripts and association with translating mRNPs. Lemieux C, et al. Nucleic Acids Res, 2009 Jun. PMID 19336419, Free PMC Article
  4. Proteomic and functional analysis of the noncanonical poly(A) polymerase Cid14. Keller C, et al. RNA, 2010 Jun. PMID 20403971, Free PMC Article
  5. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables small ribosomal subunit rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
40S ribosomal protein uS15

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2745872..2746692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019330.3 → NP_593900.1  40S ribosomal protein uS15 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593900.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P28189
    Conserved Domains (3) summary
    PTZ00072
    Location:4 → 151
    PTZ00072; 40S ribosomal protein S13; Provisional
    COG0184
    Location:44 → 147
    RpsO; Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
    pfam08069
    Location:4 → 60
    Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain
Nucleotide Protein
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