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sod1 superoxide dismutase Sod1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542128, updated on 18-Sep-2024

Summary

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Official Symbol
sod1
Official Full Name
superoxide dismutase Sod1
Primary source
PomBase:SPAC821.10c
Locus tag
SPOM_SPAC821.10C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See sod1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (1002838..1003600, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cell septum surface endo-1,3-beta-glucanase Eng1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The effect of superoxide dismutase deficiency on zinc toxicity in Schizosaccharomyces pombe. Tarhan C, et al. J Basic Microbiol, 2007 Dec. PMID 18072251
  2. Accelerated chronological aging of a mutant fission yeast deficient in both glutathione and superoxide dismutase having cu and zn as cofactors and its enhancement by sir2 deficiency. Mutoh N, et al. Biosci Biotechnol Biochem, 2007 Nov. PMID 17986764
  3. Inactivation of homocitrate synthase causes lysine auxotrophy in copper/zinc-containing superoxide dismutase-deficient yeast Schizosaccharomyces pombe. Kwon ES, et al. J Biol Chem, 2006 Jan 20. PMID 16299000
  4. The peroxiredoxin Tpx1 is essential as a H2O2 scavenger during aerobic growth in fission yeast. Jara M, et al. Mol Biol Cell, 2007 Jun. PMID 17409354, Free PMC Article
  5. A large complex mediated by Moc1, Moc2 and Cpc2 regulates sexual differentiation in fission yeast. Paul SK, et al. FEBS J, 2009 Sep. PMID 19682301

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The fission yeast Schizosaccharomyces pombe lacking copper/zinc-containing superoxide dismutase is auxotrophic for lysine.
    Title: Inactivation of homocitrate synthase causes lysine auxotrophy in copper/zinc-containing superoxide dismutase-deficient yeast Schizosaccharomyces pombe.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables copper ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables superoxide dismutase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables superoxide dismutase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell redox homeostasis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in intracellular copper ion homeostasis ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in intracellular zinc ion homeostasis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in removal of superoxide radicals IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in mitochondrial intermembrane space ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
superoxide dismutase Sod1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1002838..1003600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018561.3 → NP_593163.1  superoxide dismutase Sod1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593163.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P28758
    Conserved Domains (1) summary
    pfam00080
    Location:13 → 150
    Sod_Cu; Copper/zinc superoxide dismutase (SODC)
Nucleotide Protein
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Gene LinkOut

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