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[ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542298, updated on 22-Aug-2024

Summary

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Primary source
PomBase:SPAC29A4.02c
Locus tag
SPOM_SPAC29A4.02C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (5143803..5145515)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Schizosaccharomyces specific protein Neighboring gene ncRNA Neighboring gene pseudouridylate synthase Cbf5 Neighboring gene putative mitochondrial ribosomal protein subunit Mrps9 Neighboring gene ncRNA Neighboring gene flavoprotein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Peptide elongation factor 1 from yeasts: purification and biochemical characterization of peptide elongation factors 1 alpha and 1 beta (gamma) from Saccharomyces carlsbergensis and Schizosaccharomyces pombe. Miyazaki M, et al. J Biochem, 1988 Mar. PMID 3214489
  2. Cdk inhibitor ste9p/srw1p is involved in response to protein synthesis inhibition in fission yeast. Sakai T. Biochem Biophys Res Commun, 2004 Mar 19. PMID 14985109
  3. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article
  4. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  5. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables translation elongation factor activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translational elongation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in translational elongation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
translation elongation factor EF-1 gamma subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5143803..5145515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020309.3 → NP_594880.1  translation elongation factor EF-1 gamma subunit [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594880.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14005, P40921
    Conserved Domains (4) summary
    cd03181
    Location:89 → 211
    GST_C_EF1Bgamma_like; Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of Elongation Factor 1B and similar proteins
    COG0625
    Location:5 → 192
    GstA; Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
    cd03044
    Location:4 → 76
    GST_N_EF1Bgamma; GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of ...
    pfam00647
    Location:251 → 357
    EF1G; Elongation factor 1 gamma, conserved domain
Nucleotide Protein
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