U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

phx1 DNA-binding transcription factor, stationary phase-specific Phx1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542405, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
phx1
Official Full Name
DNA-binding transcription factor, stationary phase-specific Phx1
Primary source
PomBase:SPAC32A11.03c
Locus tag
SPOM_SPAC32A11.03C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See phx1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (2451793..2456518, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tryptophan synthase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A homeobox protein Phx1 regulates long-term survival and meiotic sporulation in Schizosaccharomyces pombe. Kim JY, et al. BMC Microbiol, 2012 May 30. PMID 22646093, Free PMC Article
  2. Inactivation of homocitrate synthase causes lysine auxotrophy in copper/zinc-containing superoxide dismutase-deficient yeast Schizosaccharomyces pombe. Kwon ES, et al. J Biol Chem, 2006 Jan 20. PMID 16299000
  3. A metabolic strategy to enhance long-term survival by Phx1 through stationary phase-specific pyruvate decarboxylases in fission yeast. Kim JY, et al. Aging (Albany NY), 2014 Jul. PMID 25102102, Free PMC Article
  4. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
  5. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Phx1 is a transcriptional regulator whose synthesis is elevated during stationary phase and by nutrient starvation in Schizosaccharomyces pombe.
    Title: A homeobox protein Phx1 regulates long-term survival and meiotic sporulation in Schizosaccharomyces pombe.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity EXP
Inferred from Experiment
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific NAS
Non-traceable Author Statement
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of glycolytic fermentation to ethanol IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in chromatin IC
Inferred by Curator
more info
  
is_active_in nucleus HDA PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA-binding transcription factor, stationary phase-specific Phx1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2451793..2456518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019205.3 → NP_593776.1  DNA-binding transcription factor, stationary phase-specific Phx1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593776.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q10328
    Conserved Domains (1) summary
    COG5576
    Location:116 → 272
    COG5576; Homeodomain-containing transcription factor [Transcription]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials