U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

uaf2 U2 auxiliary factor small subunit Uaf2 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542482, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
uaf2
Official Full Name
U2 auxiliary factor small subunit Uaf2
Primary source
PomBase:SPAP8A3.06
Locus tag
SPOM_SPAP8A3.06
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
ods2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See uaf2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (5325594..5326435)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene plasma membrane heat shock protein Hsp9 Neighboring gene ncRNA Neighboring gene ski complex-interacting GTPase Neighboring gene ncRNA Neighboring gene phospho-2-dehydro-3-deoxyheptonate aldolase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1. Yoshida H, et al. Nat Commun, 2020 Sep 21. PMID 32958768, Free PMC Article
  2. The small subunit of the splicing factor U2AF is conserved in fission yeast. Wentz-Hunter K, et al. Nucleic Acids Res, 1996 May 15. PMID 8657565, Free PMC Article
  3. A novel 3' splice site recognition by the two zinc fingers in the U2AF small subunit. Yoshida H, et al. Genes Dev, 2015 Aug 1. PMID 26215567, Free PMC Article
  4. The splicing factor U2AF small subunit is functionally conserved between fission yeast and humans. Webb CJ, et al. Mol Cell Biol, 2004 May. PMID 15121844, Free PMC Article
  5. Analysis of mutant phenotypes and splicing defects demonstrates functional collaboration between the large and small subunits of the essential splicing factor U2AF in vivo. Webb CJ, et al. Mol Biol Cell, 2005 Feb. PMID 15548596, Free PMC Article

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables pre-mRNA 3'-splice site binding EXP
Inferred from Experiment
more info
 PubMed 
enables pre-mRNA 3'-splice site binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-splice site recognition EXP
Inferred from Experiment
more info
 PubMed 
involved_in mRNA cis splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of U2-type prespliceosome IDA
Inferred from Direct Assay
more info
 PubMed 
part_of U2AF complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U2AF complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of commitment complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
part_of spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
U2 auxiliary factor small subunit Uaf2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5325594..5326435
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020376.3 → NP_594945.1  U2 auxiliary factor small subunit Uaf2 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594945.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09176
    Conserved Domains (2) summary
    pfam00642
    Location:13 → 39
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cd12538
    Location:43 → 140
    RRM_U2AF35; RNA recognition motif (RRM) found in U2 small nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa subunit (U2AF35)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials