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yip11 SMN complex subunit Yip11/Gem2 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542486, updated on 18-Sep-2024

Summary

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Official Symbol
yip11
Official Full Name
SMN complex subunit Yip11/Gem2
Primary source
PomBase:SPAC19B12.12c
Locus tag
SPOM_SPAC19B12.12C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
yip1; yip1-a
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Genomic context

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See yip11 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003424.3 (4904221..4906394, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Atg8 deconjugator Atg4 Neighboring gene signal recognition particle subunit Srp14 Neighboring gene AMSH-like ubiquitin-specific protease Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene zinc finger ribosome biogenesis protein Neighboring gene ncRNA Neighboring gene rsm22-cox11 tandem protein cox1102 Neighboring gene ncRNA Neighboring gene 19S proteasome regulatory subunit Rpn502

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Schizosaccharomyces pombe protein Yab8p and a novel factor, Yip1p, share structural and functional similarity with the spinal muscular atrophy-associated proteins SMN and SIP1. Hannus S, et al. Hum Mol Genet, 2000 Mar 22. PMID 10749973
  2. Identification and structural analysis of the Schizosaccharomyces pombe SMN complex. Veepaschit J, et al. Nucleic Acids Res, 2021 Jul 21. PMID 33754639, Free PMC Article
  3. Oligomeric Properties of Survival Motor Neuron·Gemin2 Complexes. Gupta K, et al. J Biol Chem, 2015 Aug 14. PMID 26092730, Free PMC Article
  4. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in spliceosomal snRNP assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of SMN complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of SMN complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
SMN complex subunit Yip11/Gem2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4904221..4906394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020202.2 → NP_594775.1  SMN complex subunit Yip11/Gem2 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594775.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0CU08, P0CU09, Q9P347
    Conserved Domains (1) summary
    pfam04938
    Location:45 → 208
    SIP1; Survival motor neuron (SMN) interacting protein 1 (SIP1)
Nucleotide Protein
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