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edc1 protein Edc1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542536, updated on 18-Sep-2024

Summary

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Official Symbol
edc1
Official Full Name
protein Edc1
Primary source
PomBase:SPAC18G6.09c
Locus tag
SPOM_SPAC18G6.09C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
dbs1
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Genomic context

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See edc1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (2231661..2234160, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene rRNA (pseudouridine) methyltransferase Mra1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene LEM domain nuclear inner membrane protein Heh1/Lem2 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Changes in conformational equilibria regulate the activity of the Dcp2 decapping enzyme. Wurm JP, et al. Proc Natl Acad Sci U S A, 2017 Jun 6. PMID 28533364, Free PMC Article
  2. Structure of the Dcp2-Dcp1 mRNA-decapping complex in the activated conformation. Valkov E, et al. Nat Struct Mol Biol, 2016 Jun. PMID 27183195
  3. The S. pombe mRNA decapping complex recruits cofactors and an Edc1-like activator through a single dynamic surface. Wurm JP, et al. RNA, 2016 Sep. PMID 27354705, Free PMC Article
  4. The structural basis of Edc3- and Scd6-mediated activation of the Dcp1:Dcp2 mRNA decapping complex. Fromm SA, et al. EMBO J, 2012 Jan 18. PMID 22085934, Free PMC Article
  5. Phosphorylation of the RNA-binding protein Zfs1 modulates sexual differentiation in fission yeast. Navarro FJ, et al. J Cell Sci, 2017 Dec 15. PMID 29084823, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables mRNA phosphatase activator activity EXP
Inferred from Experiment
more info
 PubMed 
enables mRNA phosphatase activator activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA methylguanosine-cap decapping IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA decapping complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
protein Edc1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2231661..2234160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019104.3 → NP_593672.1  protein Edc1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593672.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q10108
    Conserved Domains (1) summary
    pfam15365
    Location:157 → 212
    PNRC; Proline-rich nuclear receptor coactivator
Nucleotide Protein
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