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rfp1 SUMO-targeted ubiquitin-protein ligase subunit Rfp1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542542, updated on 18-Sep-2024

Summary

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Official Symbol
rfp1
Official Full Name
SUMO-targeted ubiquitin-protein ligase subunit Rfp1
Primary source
PomBase:SPAC19A8.10
Locus tag
SPOM_SPAC19A8.10
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
mug140
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Genomic context

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See rfp1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (2465369..2467309, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene U1 snRNP-associated protein Usp101 Neighboring gene mRNA-decapping complex catalytic subunit Dcp2 Neighboring gene ncRNA Neighboring gene recombination protein Irc6 Neighboring gene transport protein Yos1 Neighboring gene nonsense-mediated decay protein Upf2 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved function of RNF4 family proteins in eukaryotes: targeting a ubiquitin ligase to SUMOylated proteins. Sun H, et al. EMBO J, 2007 Sep 19. PMID 17762864, Free PMC Article
  2. Fission yeast Rnf4 homologs are required for DNA repair. Kosoy A, et al. J Biol Chem, 2007 Jul 13. PMID 17502373
  3. Expression of hsp16 in response to nucleotide depletion is regulated via the spc1 MAPK pathway in Schizosaccharomyces pombe. Taricani L, et al. Nucleic Acids Res, 2001 Jul 15. PMID 11452028, Free PMC Article
  4. Concerted action of the ubiquitin-fusion degradation protein 1 (Ufd1) and Sumo-targeted ubiquitin ligases (STUbLs) in the DNA-damage response. Køhler JB, et al. PLoS One, 2013. PMID 24265825, Free PMC Article
  5. The nuclear pore primes recombination-dependent DNA synthesis at arrested forks by promoting SUMO removal. Kramarz K, et al. Nat Commun, 2020 Nov 6. PMID 33159083, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in DNA repair IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in stalled replication fork localization to nuclear periphery IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
part_of SUMO-targeted ubiquitin ligase complex IPI
Inferred from Physical Interaction
more info
 PubMed 
is_active_in chromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in site of double-strand break IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SUMO-targeted ubiquitin-protein ligase subunit Rfp1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2465369..2467309 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019211.3 → NP_593782.1  SUMO-targeted ubiquitin-protein ligase subunit Rfp1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593782.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13826
    Conserved Domains (1) summary
    pfam14634
    Location:189 → 241
    zf-RING_5; zinc-RING finger domain
Nucleotide Protein
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