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Elf1 family transcription elongation factor [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542550, updated on 18-Sep-2024

Summary

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Official Full Name
Elf1 family transcription elongation factor
Primary source
PomBase:SPAC1B3.02c
Locus tag
SPOM_SPAC1B3.02C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003424.3 (4928172..4929545, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uracil phosphoribosyltransferase Neighboring gene chaperone, AAA family ATPase Rvb1 Neighboring gene protein Min8 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cyclophilin family peptidyl-prolyl cis-trans isomerase Wis2 Neighboring gene GTPase GUF1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Sarsam RD, et al. Proc Natl Acad Sci U S A, 2024 Jan 16. PMID 38194460, Free PMC Article
  2. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  3. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article
  4. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA polymerase II complex binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transcription elongation factor activity ISO
Inferred from Sequence Orthology
more info
  
enables zinc ion binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in transcription elongation by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription elongation by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
involved_in transcription-coupled nucleotide-excision repair TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
is_active_in nucleus HDA PubMed 
part_of transcription elongation factor complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Elf1 family transcription elongation factor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4928172..4929545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020214.3 → NP_594786.1  Elf1 family transcription elongation factor [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594786.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13868
    Conserved Domains (1) summary
    COG4888
    Location:1 → 103
    Elf1; Transcription elongation factor Elf1, contains Zn-ribbon domain [Transcription]
Nucleotide Protein
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