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SPOM_SPACUNK4.15 2',3'-cyclic-nucleotide 3'-phosphodiesterase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542612, updated on 22-Jun-2024

Summary

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Gene symbol
SPOM_SPACUNK4.15
Gene description
2',3'-cyclic-nucleotide 3'-phosphodiesterase
Locus tag
SPOM_SPACUNK4.15
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Old locus tag
SPACUNK4.15
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Genomic context

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See SPOM_SPACUNK4.15 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (2880963..2882181, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene alpha,alpha-trehalose-phosphate synthase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene BRCT domain protein Mdb1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional characterization of fission yeast transcription factors by overexpression analysis. Vachon L, et al. Genetics, 2013 Aug. PMID 23695302, Free PMC Article
  2. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article
  3. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cyclic nucleotide metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cyclic nucleotide metabolic process ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in clathrin-coated vesicle ISO
Inferred from Sequence Orthology
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
2',3'-cyclic-nucleotide 3'-phosphodiesterase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2880963..2882181 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001356089.2 → NP_001342742.1  2',3'-cyclic-nucleotide 3'-phosphodiesterase [Schizosaccharomyces pombe]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14080
    Conserved Domains (1) summary
    PRK13679
    Location:68 → 152
    PRK13679; hypothetical protein; Provisional
Nucleotide Protein
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