U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nht1 Ino80 complex HMG box subunit Nht1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542665, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
nht1
Official Full Name
Ino80 complex HMG box subunit Nht1
Primary source
PomBase:SPAC10F6.08c
Locus tag
SPOM_SPAC10F6.08C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
hap1; nhp10; nht10
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See nht1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003424.3 (1219667..1220852, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RNA-binding protein Vip1 Neighboring gene ncRNA Neighboring gene protein mug94 Neighboring gene ncRNA Neighboring gene mitotic/meiotic cohesin complex ATPase subunit Psm3/Smc3 Neighboring gene RIO family protein kinase Neighboring gene autophagy-associated protein kinase activator Atg17

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Two fission yeast high mobility group box proteins in the maintenance of genomic integrity following doxorubicin insult. Tang MY, et al. Gene, 2015 May 10. PMID 25701403
  2. Genome-wide mapping of myosin protein-RNA networks suggests the existence of specialized protein production sites. Mata J. FASEB J, 2010 Feb. PMID 19805578
  3. Fission yeast Iec1-ino80-mediated nucleosome eviction regulates nucleotide and phosphate metabolism. Hogan CJ, et al. Mol Cell Biol, 2010 Feb. PMID 19933844, Free PMC Article
  4. The INO80 Complex Regulates Epigenetic Inheritance of Heterochromatin. Shan CM, et al. Cell Rep, 2020 Dec 29. PMID 33378674, Free PMC Article
  5. Fitness profiling links topoisomerase II regulation of centromeric integrity to doxorubicin resistance in fission yeast. Nguyen TT, et al. Sci Rep, 2015 Feb 11. PMID 25669599, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA end binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in DNA repair ISO
Inferred from Sequence Orthology
more info
  
involved_in chromatin remodeling IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in transcription initiation-coupled chromatin remodeling IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
part_of Ino80 complex IPI
Inferred from Physical Interaction
more info
 PubMed 
is_active_in nucleus HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Ino80 complex HMG box subunit Nht1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1219667..1220852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018656.3 → NP_593259.1  Ino80 complex HMG box subunit Nht1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593259.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O42648
    Conserved Domains (1) summary
    cl00082
    Location:195 → 247
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials