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rrn5 RNA polymerase I upstream activation factor complex subunit Rrn5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542734, updated on 18-Sep-2024

Summary

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Official Symbol
rrn5
Official Full Name
RNA polymerase I upstream activation factor complex subunit Rrn5
Primary source
PomBase:SPAC29A4.10
Locus tag
SPOM_SPAC29A4.10
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See rrn5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (5129264..5131831, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Rho-type GTPase-activating protein Rga3 Neighboring gene protein mug108 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene rRNA exonuclease Rrp17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dissection of the essential steps for condensin accumulation at kinetochores and rDNAs during fission yeast mitosis. Nakazawa N, et al. J Cell Biol, 2008 Mar 24. PMID 18362178, Free PMC Article
  2. Characterization of the fission yeast ribosomal DNA binding factor: components share homology with Upstream Activating Factor and with SWI/SNF subunits. Liu M, et al. Nucleic Acids Res, 2002 Dec 15. PMID 12490702, Free PMC Article
  3. The nucleolar Net1/Cfi1-related protein Dnt1 antagonizes the septation initiation network in fission yeast. Jin QW, et al. Mol Biol Cell, 2007 Aug. PMID 17538026, Free PMC Article
  4. Large-scale screening of intracellular protein localization in living fission yeast cells by the use of a GFP-fusion genomic DNA library. Ding DQ, et al. Genes Cells, 2000 Mar. PMID 10759889
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
contributes_to RNA polymerase I general transcription initiation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
contributes_to RNA polymerase I general transcription initiation factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables rDNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables rDNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleolar large rRNA transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
  
involved_in transcription initiation at RNA polymerase I promoter IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription initiation at RNA polymerase I promoter IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I upstream activating factor complex EXP
Inferred from Experiment
more info
 PubMed 
part_of RNA polymerase I upstream activating factor complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of RNA polymerase I upstream activating factor complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleolus HDA PubMed 
is_active_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
RNA polymerase I upstream activation factor complex subunit Rrn5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5129264..5131831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020301.3 → NP_594872.1  RNA polymerase I upstream activation factor complex subunit Rrn5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594872.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14013, Q9USB1
    Conserved Domains (2) summary
    smart00717
    Location:71 → 116
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:74 → 116
    Myb_DNA-binding; Myb-like DNA-binding domain
Nucleotide Protein
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