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pof5 F-box protein Pof5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542810, updated on 18-Sep-2024

Summary

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Official Symbol
pof5
Official Full Name
F-box protein Pof5
Primary source
PomBase:SPAC6F6.02c
Locus tag
SPOM_SPAC6F6.02C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See pof5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (2732373..2733860, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene plasma membrane calcium ion import channel Cch1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosome export GTPase Neighboring gene transporter Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation and characterization of a novel F-box protein Pof10 in fission yeast. Ikebe C, et al. Biochem Biophys Res Commun, 2002 Feb 8. PMID 11820777
  2. CAND1 controls in vivo dynamics of the cullin 1-RING ubiquitin ligase repertoire. Wu S, et al. Nat Commun, 2013. PMID 23535663, Free PMC Article
  3. Molecular interactions of fission yeast Skp1 and its role in the DNA damage checkpoint. Lehmann A, et al. Genes Cells, 2004 May. PMID 15147268
  4. Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes. Dixon SJ, et al. Proc Natl Acad Sci U S A, 2008 Oct 28. PMID 18931302, Free PMC Article
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin-like ligase-substrate adaptor activity ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ubiquitin ligase complex ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box protein Pof5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2732373..2733860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019325.3 → NP_593895.1  F-box protein Pof5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593895.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14235
    Conserved Domains (2) summary
    smart00367
    Location:195 → 219
    LRR_CC; Leucine-rich repeat - CC (cysteine-containing) subfamily
    sd00034
    Location:100 → 123
    LRR_AMN1; leucine-rich repeat [structural motif]
Nucleotide Protein
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