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apl5 AP-3 adaptor complex subunit Apl5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542857, updated on 18-Sep-2024

Summary

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Official Symbol
apl5
Official Full Name
AP-3 adaptor complex subunit Apl5
Primary source
PomBase:SPAC144.06
Locus tag
SPOM_SPAC144.06
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See apl5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003424.3 (4664334..4668408)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ATP-dependent DNA helicase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene GTPase Gpn2 Neighboring gene DNAJ domain-containing protein Jac1 Neighboring gene transcription factor TFIIIA Neighboring gene ncRNA Neighboring gene pig-W

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genetic screen to discover pathways affecting cohesin function in Schizosaccharomyces pombe identifies chromatin effectors. Chen Z, et al. G3 (Bethesda), 2012 Oct. PMID 23050226, Free PMC Article
  2. Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Rallis C, et al. Sci Rep, 2017 Mar 10. PMID 28281664, Free PMC Article
  3. Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex. Stewart EV, et al. Mol Cell, 2011 Apr 22. PMID 21504829, Free PMC Article
  4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
contributes_to clathrin adaptor activity IC
Inferred by Curator
more info
  
Process Evidence Code Pubs
involved_in Golgi to vacuole transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein targeting to vacuole IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of AP-3 adaptor complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in clathrin-coated vesicle membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
AP-3 adaptor complex subunit Apl5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4664334..4668408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020096.3 → NP_594667.2  AP-3 adaptor complex subunit Apl5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594667.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9UTL8
    Conserved Domains (3) summary
    cd00020
    Location:140 → 206
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam01602
    Location:21 → 577
    Adaptin_N; Adaptin N terminal region
    sd00044
    Location:212 → 236
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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