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alm1 nucleoporin Alm1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542883, updated on 18-Sep-2024

Summary

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Official Symbol
alm1
Official Full Name
nucleoporin Alm1
Primary source
PomBase:SPAC1486.04c
Locus tag
SPOM_SPAC1486.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See alm1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (3191447..3196767, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RNA-binding splicing factor Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene nucleoporin Nup98 and Nup96 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene F1F0 ATP synthase assembly factor Fmc1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Closed mitosis requires local disassembly of the nuclear envelope. Dey G, et al. Nature, 2020 Sep. PMID 32848252, Free PMC Article
  2. Acute Heat Stress Leads to Reversible Aggregation of Nuclear Proteins into Nucleolar Rings in Fission Yeast. Gallardo P, et al. Cell Rep, 2020 Nov 10. PMID 33176152
  3. The fission yeast nucleoporin Alm1 is required for proteasomal degradation of kinetochore components. Salas-Pino S, et al. J Cell Biol, 2017 Nov 6. PMID 28974540, Free PMC Article
  4. SIN-inhibitory phosphatase complex promotes Cdc11p dephosphorylation and propagates SIN asymmetry in fission yeast. Singh NS, et al. Curr Biol, 2011 Dec 6. PMID 22119525, Free PMC Article
  5. Expanded Interactome of the Intrinsically Disordered Protein Dss1. Schenstrøm SM, et al. Cell Rep, 2018 Oct 23. PMID 30355493, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Demonstrate a novel function of the nucleoporin Alm1 in proteasome localization required for kinetochore homeostasis
    Title: The fission yeast nucleoporin Alm1 is required for proteasomal degradation of kinetochore components.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables structural constituent of nuclear pore EXP
Inferred from Experiment
more info
 PubMed 
enables structural constituent of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of mitotic recombination-dependent replication fork processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
NOT is_active_in mitotic nuclear bridge EXP
Inferred from Experiment
more info
 PubMed 
is_active_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nuclear pore EXP
Inferred from Experiment
more info
 PubMed 
part_of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of nuclear pore nuclear basket EXP
Inferred from Experiment
more info
 PubMed 
part_of nuclear pore nuclear basket IMP
Inferred from Mutant Phenotype
more info
 PubMed 
is_active_in nucleolar peripheral inclusion body IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
nucleoporin Alm1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    3191447..3196767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019516.3 → NP_594092.1  nucleoporin Alm1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594092.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13313, Q9UTK5, Q9UTT8
    Conserved Domains (2) summary
    COG1196
    Location:84 → 885
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:764 → 1567
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
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