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sdu1 PPPDE peptidase family protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542933, updated on 18-Sep-2024

Summary

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Official Symbol
sdu1
Official Full Name
PPPDE peptidase family protein
Primary source
PomBase:SPAPYUG7.06
Locus tag
SPOM_SPAPYUG7.06
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
hag1; mug67
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Genomic context

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See sdu1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (4754155..4754926)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene septin ring organizing protein Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase II complex TFIIS subunit Rpb9 Neighboring gene ncRNA Neighboring gene delta-1-pyrroline-5-carboxylate reductase Neighboring gene proteasome assembly chaperone Ecm29 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Deubiquitinating activity of Sdu1, a putative member of the PPPDE peptidase family, in Schizosaccharomyces pombe. Kim Y, et al. Can J Microbiol, 2013 Dec. PMID 24313451
  2. Global coordination of transcriptional control and mRNA decay during cellular differentiation. Amorim MJ, et al. Mol Syst Biol, 2010 Jun 8. PMID 20531409, Free PMC Article
  3. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  4. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article
  5. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables deubiquitinase activity EXP
Inferred from Experiment
more info
 PubMed 
enables deubiquitinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 

General protein information

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Preferred Names
PPPDE peptidase family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4754155..4754926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020134.3 → NP_594707.2  PPPDE peptidase family protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594707.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q8X1T0, Q9P7Y6
    UniProtKB/TrEMBL
    L7SU69
    Conserved Domains (1) summary
    pfam05903
    Location:1 → 137
    Peptidase_C97; PPPDE putative peptidase domain
Nucleotide Protein
Heading Accession and Version

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