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LINC00710 long intergenic non-protein coding RNA 710 [ Homo sapiens (human) ]

Gene ID: 254312, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00710provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 710provided by HGNC
Primary source
HGNC:HGNC:27386
See related
Ensembl:ENSG00000229240 AllianceGenome:HGNC:27386
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 11.9) See more
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Genomic context

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See LINC00710 in Genome Data Viewer
Location:
10p14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (10934940..10952163, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (10945269..10962489, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (10976903..10994126, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene CUGBP Elav-like family member 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:10839838-10840532 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:10840533-10841226 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:10846798-10847997 Neighboring gene NANOG hESC enhancer GRCh37_chr10:10862511-10863057 Neighboring gene ORMDL1 pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:10872688-10873887 Neighboring gene surfactant associated 1, lncRNA Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2122 Neighboring gene uncharacterized LOC124902376 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2123 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2124 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:11075383-11075893 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:11091414-11091914 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:11113336-11114535 Neighboring gene CELF2 antisense RNA 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015413.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longest transcript.
    Source sequence(s)
    BC033338, DB038073
    Related
    ENST00000618245.5

  2. NR_024410.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, as compared to variant 1.
    Source sequence(s)
    BC033338, DB038073
    Related
    ENST00000653692.1

  3. NR_024411.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two internal exons, as compared to variant 1.
    Source sequence(s)
    BC033338, BC113009, DB038073
    Related
    ENST00000635670.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    10934940..10952163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    10945269..10962489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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