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cid13 cytoplasmic poly(A) polymerase Cid13 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543204, updated on 18-Sep-2024

Summary

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Official Symbol
cid13
Official Full Name
cytoplasmic poly(A) polymerase Cid13
Primary source
PomBase:SPAC821.04c
Locus tag
SPOM_SPAC821.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See cid13 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (983567..987020, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene COP9/signalosome complex subunit Csn3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein Slf1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene translation initiation factor eIF3h (p40)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The intron in centromeric noncoding RNA facilitates RNAi-mediated formation of heterochromatin. Mutazono M, et al. PLoS Genet, 2017 Feb. PMID 28231281, Free PMC Article
  2. Cytoplasmic poly(A) polymerases mediate cellular responses to S phase arrest. Read RL, et al. Proc Natl Acad Sci U S A, 2002 Sep 17. PMID 12218190, Free PMC Article
  3. Identification of novel suppressors for Mog1 implies its involvement in RNA metabolism, lipid metabolism and signal transduction. Oki M, et al. Gene, 2007 Oct 1. PMID 17651922
  4. Cid13 is a cytoplasmic poly(A) polymerase that regulates ribonucleotide reductase mRNA. Saitoh S, et al. Cell, 2002 May 31. PMID 12062100
  5. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
NOT enables DNA polymerase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA 3'-UTR binding NAS
Non-traceable Author Statement
more info
  
enables nucleotidyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables poly(A) RNA polymerase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3'-UTR-mediated mRNA stabilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in RNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol HDA PubMed 

General protein information

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Preferred Names
cytoplasmic poly(A) polymerase Cid13

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    983567..987020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018555.3 → NP_593157.1  cytoplasmic poly(A) polymerase Cid13 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593157.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9UT49
    Conserved Domains (3) summary
    cd05402
    Location:71 → 183
    NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
    COG5260
    Location:1 → 545
    TRF4; DNA polymerase sigma [Replication, recombination and repair]
    pfam03828
    Location:275 → 331
    PAP_assoc; Cid1 family poly A polymerase
Nucleotide Protein
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