U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

XP-G family Fen1-like nuclease [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543216, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
XP-G family Fen1-like nuclease
Primary source
PomBase:SPAC12G12.16c
Locus tag
SPOM_SPAC12G12.16C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (315608..317585)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene N-acetyltransferase Neighboring gene ncRNA Neighboring gene tRNA pseudouridylate synthase Neighboring gene ncRNA Neighboring gene Sad1-interacting factor 3 Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  2. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene. Lang BF, et al. J Mol Biol, 1985 Aug 5. PMID 4046021

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables 5'-3' DNA exonuclease activity ISO
Inferred from Sequence Orthology
more info
  
enables 5'-3' exonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables 5'-flap endonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm HDA PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
XP-G family Fen1-like nuclease

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    315608..317585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018282.3 → NP_592882.1  XP-G family Fen1-like nuclease [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_592882.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09708, Q9UTN5
    Conserved Domains (5) summary
    cd09897
    Location:363 → 429
    H3TH_FEN1-XPG-like; H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases
    COG0258
    Location:18 → 404
    Exo; 5'-3' exonuclease [Replication, recombination and repair]
    cl02628
    Location:2 → 103
    XPG_N; XPG N-terminal domain
    pfam00867
    Location:286 → 375
    XPG_I; XPG I-region
    cl14812
    Location:202 → 335
    PIN_SF; PIN (PilT N terminus) domain: Superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials