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hsr1 DNA-binding transcription factor Hsr1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543251, updated on 18-Sep-2024

Summary

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Official Symbol
hsr1
Official Full Name
DNA-binding transcription factor Hsr1
Primary source
PomBase:SPAC3H1.11
Locus tag
SPOM_SPAC3H1.11
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
msn2
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Genomic context

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See hsr1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (1957473..1961546)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Lid2 complex PHD finger subunit Snt2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple pathways differentially regulate global oxidative stress responses in fission yeast. Chen D, et al. Mol Biol Cell, 2008 Jan. PMID 18003976, Free PMC Article
  2. Chronological lifespan extension by Ecl1 family proteins depends on Prr1 response regulator in fission yeast. Ohtsuka H, et al. Genes Cells, 2012 Jan. PMID 22212525
  3. Phosphorylation of the RNA-binding protein Zfs1 modulates sexual differentiation in fission yeast. Navarro FJ, et al. J Cell Sci, 2017 Dec 15. PMID 29084823, Free PMC Article
  4. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
  
enables cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to starvation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in chromatin ISM
Inferred from Sequence Model
more info
  
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DNA-binding transcription factor Hsr1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1957473..1961546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018986.3 → NP_593553.1  DNA-binding transcription factor Hsr1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593553.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q10076
    Conserved Domains (4) summary
    COG5048
    Location:103 → 582
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:425 → 446
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:423 → 444
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:437 → 462
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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