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glycoprotein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543356, updated on 18-Sep-2024

Summary

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Official Full Name
glycoprotein
Primary source
PomBase:SPAPB2C8.01
Locus tag
SPOM_SPAPB2C8.01
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (2942320..2946190)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular phylogenetics of ascomycotal adhesins--a novel family of putative cell-surface adhesive proteins in fission yeasts. Linder T, et al. Fungal Genet Biol, 2008 Apr. PMID 17870620
  2. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables cell adhesion mediator activity ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in cell-cell adhesion TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
is_active_in external side of fungal-type cell wall ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycoprotein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2942320..2946190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019413.3 → NP_593987.1  glycoprotein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593987.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9C0Y2
    Conserved Domains (3) summary
    COG3391
    Location:96 → 439
    YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]
    PRK08026
    Location:486 → 745
    PRK08026; flagellin; Validated
    pfam10528
    Location:1093 → 1204
    PA14_2; GLEYA domain
Nucleotide Protein
Heading Accession and Version

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