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SPOM_SPAC4G8.09 leucine--tRNA (Leu) ligase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543476, updated on 22-Jun-2024

Summary

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Gene symbol
SPOM_SPAC4G8.09
Gene description
leucine--tRNA (Leu) ligase
Locus tag
SPOM_SPAC4G8.09
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Old locus tag
SPAC4G8.09
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Genomic context

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See SPOM_SPAC4G8.09 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (778400..781324)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene mitochondrial iron ion transporter Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene F1-F0 ATPase assembly protein Neighboring gene SNARE protein Gos1 Neighboring gene ncRNA Neighboring gene alpha-1,2-mannosyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding ISM
Inferred from Sequence Model
more info
  
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
  
enables leucine-tRNA ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in Group I intron splicing ISO
Inferred from Sequence Orthology
more info
  
involved_in leucyl-tRNA aminoacylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mitochondrial translation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in mitochondrial matrix IC
Inferred by Curator
more info
  
is_active_in mitochondrion HDA PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
leucine--tRNA (Leu) ligase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    778400..781324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018467.3 → NP_593069.1  leucine--tRNA (Leu) ligase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593069.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09828
    Conserved Domains (4) summary
    cd00812
    Location:59 → 667
    LeuRS_core; catalytic core domain of leucyl-tRNA synthetases
    PRK00390
    Location:33 → 872
    leuS; leucyl-tRNA synthetase; Validated
    pfam13603
    Location:247 → 414
    tRNA-synt_1_2; Leucyl-tRNA synthetase, Domain 2
    cl12020
    Location:667 → 791
    Anticodon_Ia_like; Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains
Nucleotide Protein
Heading Accession and Version

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