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cdc5 splicing factor Cdc5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543583, updated on 18-Sep-2024

Summary

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Official Symbol
cdc5
Official Full Name
splicing factor Cdc5
Primary source
PomBase:SPAC644.12
Locus tag
SPOM_SPAC644.12
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
cef1
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Genomic context

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See cdc5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
6
Sequence:
Chromosome: I; NC_003424.3 (2694699..2697430)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene [pyruvate dehydrogenase (acetyl-transferring)] kinase Pkp1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Rab GTPase-binding protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RecA family recombinase Rad51/Rhp51

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Schizosaccharomyces pombe cdc5+ gene encodes an essential protein with homology to c-Myb. Ohi R, et al. EMBO J, 1994 Jan 15. PMID 8313892, Free PMC Article
  2. Structural and functional insights into the N-terminus of Schizosaccharomyces pombe Cdc5. Collier SE, et al. Biochemistry, 2014 Oct 21. PMID 25263959, Free PMC Article
  3. Promoter-driven splicing regulation in fission yeast. Moldón A, et al. Nature, 2008 Oct 16. PMID 18815595
  4. The Prp19 WD40 domain contains a conserved protein interaction region essential for its function. Vander Kooi CW, et al. Structure, 2010 May 12. PMID 20462492, Free PMC Article
  5. Ubiquitin-like protein Hub1 is required for pre-mRNA splicing and localization of an essential splicing factor in fission yeast. Wilkinson CR, et al. Curr Biol, 2004 Dec 29. PMID 15620657

See all (28) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome EXP
Inferred from Experiment
more info
 PubMed 
involved_in mRNA cis splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of Prp19 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Prp19 complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleolar peripheral inclusion body IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of spliceosomal complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
splicing factor Cdc5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2694699..2697430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019310.3 → NP_593880.1  splicing factor Cdc5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593880.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P39964
    Conserved Domains (4) summary
    cd11659
    Location:54 → 103
    SANT_CDC5_II; SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II
    COG5147
    Location:1 → 535
    REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
    pfam11831
    Location:417 → 611
    Myb_Cef; pre-mRNA splicing factor component
    pfam13921
    Location:9 → 69
    Myb_DNA-bind_6; Myb-like DNA-binding domain
Nucleotide Protein
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