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MIR9-3HG MIR9-3 host gene [ Homo sapiens (human) ]

Gene ID: 254559, updated on 6-Mar-2024

Summary

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Official Symbol
MIR9-3HGprovided by HGNC
Official Full Name
MIR9-3 host geneprovided by HGNC
Primary source
HGNC:HGNC:27388
See related
Ensembl:ENSG00000255571 AllianceGenome:HGNC:27388
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00925; lnc-FANCI-2
Expression
Biased expression in brain (RPKM 10.1), testis (RPKM 6.8) and 2 other tissues See more
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Genomic context

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See MIR9-3HG in Genome Data Viewer
Location:
15q26.1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (89361579..89398487)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (87117636..87154520)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (89904810..89941718)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10047 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10048 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10049 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:89880071-89880240 Neighboring gene tRNA-Arg (anticodon TCG) 1-1 Neighboring gene POLG divergent transcript Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:89891730-89892929 Neighboring gene uncharacterized LOC124903549 Neighboring gene Sharpr-MPRA regulatory region 10069 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6794 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6795 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89910855-89911468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89913278-89914160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89914161-89915042 Neighboring gene uncharacterized LOC107984777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10051 Neighboring gene microRNA 9-3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89943355-89943880 Neighboring gene uncharacterized LOC105371031 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89943881-89944405 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10052 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:89950909-89951506 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89959457-89959966 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89959967-89960475 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6797 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89977117-89977646 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89984167-89984846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89984847-89985526 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89988016-89988870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89991872-89992466 Neighboring gene uncharacterized LOC105370964 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6798 Neighboring gene uncharacterized LOC112268153

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. Baskerville S, et al. RNA, 2005 Mar. PMID 15701730, Free PMC Article
  2. MicroRNA-9 promotes the proliferation, migration, and invasion of breast cancer cells via down-regulating FOXO1. Liu DZ, et al. Clin Transl Oncol, 2017 Sep. PMID 28397066
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Our study provides evidence that miR-9 can promote the proliferation, migration, and invasion of breast cancer cells via down-regulating FOXO1.
    Title: MicroRNA-9 promotes the proliferation, migration, and invasion of breast cancer cells via down-regulating FOXO1.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CTD-2335A18.1
  • long intergenic non-protein coding RNA 925

Clone Names

  • FLJ30148, FLJ39040

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015411.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000659235.1

  2. NR_133001.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000536780.6

  3. NR_133002.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000661040.1

  4. NR_133003.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000654079.1

  5. NR_190290.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  6. NR_190291.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  7. NR_190292.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  8. NR_190293.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  9. NR_190294.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  10. NR_190295.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  11. NR_190296.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  12. NR_190297.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  13. NR_190298.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  14. NR_190299.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  15. NR_190300.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  16. NR_190301.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  17. NR_190302.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  18. NR_190303.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  19. NR_190304.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  20. NR_190305.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  21. NR_190306.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  22. NR_190307.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  23. NR_190308.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  24. NR_190309.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  25. NR_190310.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  26. NR_190311.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  27. NR_190312.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  28. NR_190313.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  29. NR_190314.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  30. NR_190315.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  31. NR_190316.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  32. NR_190317.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  33. NR_190318.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  34. NR_190319.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  35. NR_190320.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  36. NR_190321.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  37. NR_190322.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  38. NR_190323.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  39. NR_190324.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  40. NR_190325.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  41. NR_190326.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    89361579..89398487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    87117636..87154520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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