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K06A5.2 DUF389 domain membrane protein [ Caenorhabditis elegans ]

Gene ID: 259316, updated on 2-Nov-2024

Summary

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Official Symbol
K06A5.2
Official Full Name
DUF389 domain membrane protein
Primary source
WormBase:WBGene00019430
Locus tag
CELE_K06A5.2
See related
AllianceGenome:WB:WBGene00019430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See K06A5.2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (6468113..6469392)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Kinetochore null protein 2 Neighboring gene Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial Neighboring gene Major sperm protein Neighboring gene M-phase inducer phosphatase cdc-25.1 Neighboring gene Chromo domain-containing protein Neighboring gene CTLH domain-containing protein;WD_REPEATS_REGION domain-containing protein Neighboring gene STAS domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF389 domain membrane protein
NP_491861.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6468113..6469392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059460.6 → NP_491861.1  DUF389 domain membrane protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491861.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O44551
    Conserved Domains (1) summary
    pfam05884
    Location:19 → 309
    ZYG-11_interact; Interactor of ZYG-11
Nucleotide Protein
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